SNP Detail For rs181502228
1.Mapping Information
Human SNP ID rs181502228
Human chromosome chr1
Human SNP position 205540170
Pig chromosome chr9
Pig SNP position 72472921
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region1q32.1
Chromosome idchr1
Chromosome position205540170
Reported geneDSTYK
Mapped geneLOC105371700
Upstream gene id
Downstream gene id
SNP gene ids105371700
Upstream gene distance
Downstream gene distance
SNP risk allelers181502228-T
SNPsrs181502228
Merged0
SNP id current181502228
Contextintergenic_variant
Intergenic0
Allele frequency0.012
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta4.35
%95 Ci[2.35-8.07]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252