SNP Detail For rs180771047
1.Mapping Information
Human SNP ID rs180771047
Human chromosome chr2
Human SNP position 226321135
Pig chromosome chr15
Pig SNP position 141440177
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCerebral amyloid deposition in APOEe4 non-carriers (PET imaging)
Initial sample370 European and other ancestry APOEe4 non-carriers
Replication sampleNA
Region2q36.3
Chromosome idchr2
Chromosome position226321135
Reported geneLOC646736, MIR5702
Mapped geneLOC105373913 - LOC105373915
Upstream gene id105373913
Downstream gene id105373915
SNP gene ids
Upstream gene distance35263
Downstream gene distance133647
SNP risk allelers180771047-G
SNPsrs180771047
Merged
SNP id current180771047
Contextintergenic_variant
Intergenic1
Allele frequency0.0027
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta0.3689
%95 Ci[NR] unit decrease
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcerebral amyloid deposition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007707
Study accessionGCST003074