SNP Detail For rs1802295
1.Mapping Information
Human SNP ID rs1802295
Human chromosome chr10
Human SNP position 69171718
Pig chromosome chr14
Pig SNP position 78256927
2.Annotation Information
PubMed ID21874001
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21874001
StudyGenome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.
Disease/TraitType 2 diabetes
Initial sample5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls
Replication sample13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls
Region10q22.1
Chromosome idchr10
Chromosome position69171718
Reported geneVPS26A
Mapped geneVPS26A
Upstream gene id
Downstream gene id
SNP gene ids9559
Upstream gene distance
Downstream gene distance
SNP risk allelers1802295-A
SNPsrs1802295
Merged0
SNP id current1802295
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.26
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.08
%95 Ci[1.05-1.12]
PlatformIllumina [568976]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST001213