Human SNP ID | rs1802295 |
---|---|
Human chromosome | chr10 |
Human SNP position | 69171718 |
Pig chromosome | chr14 |
Pig SNP position | 78256927 |
PubMed ID | 21874001 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21874001 |
Study | Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. |
Disease/Trait | Type 2 diabetes |
Initial sample | 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls |
Replication sample | 13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 69171718 |
Reported gene | VPS26A |
Mapped gene | VPS26A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9559 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1802295-A |
SNPs | rs1802295 |
Merged | 0 |
SNP id current | 1802295 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.26 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.12] |
Platform | Illumina [568976] |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST001213 |