Human SNP ID | rs1801591 |
---|---|
Human chromosome | chr15 |
Human SNP position | 76286421 |
Pig chromosome | chr7 |
Pig SNP position | 60968412 |
PubMed ID | 26424050 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26424050 |
Study | Genome-wide association study identifies multiple susceptibility loci for glioma. |
Disease/Trait | Non-glioblastoma glioma |
Initial sample | 2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls |
Replication sample | up to 1,490 European ancestry cases, up to 1,723 European ancestry controls |
Region | 15q24.2 |
Chromosome id | chr15 |
Chromosome position | 76286421 |
Reported gene | ETFA |
Mapped gene | ETFA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2108 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1801591-A |
SNPs | rs1801591 |
Merged | |
SNP id current | 1801591 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.09 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.23鈥?.51] |
Platform | Illumina [at least 8427548] (imputed) |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST003227 |