SNP Detail For rs1800682
1.Mapping Information
Human SNP ID rs1800682
Human chromosome chr10
Human SNP position 88990206
Pig chromosome chr14
Pig SNP position 109911339
2.Annotation Information
PubMed ID24292274
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24292274
StudyA genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.
Disease/TraitChronic lymphocytic leukemia
Initial sample1,739 European ancestry cases, 5,199 European ancestry controls
Replication sample1,144 European ancestry cases, 3,151 European ancestry controls
Region10q23.31
Chromosome idchr10
Chromosome position88990206
Reported geneACTA, FAS
Mapped geneACTA2, FAS
Upstream gene id
Downstream gene id
SNP gene ids59, 355
Upstream gene distance
Downstream gene distance
SNP risk allelers1800682-A
SNPsrs1800682
Merged0
SNP id current1800682
Contextintron_variant
Intergenic0
Allele frequency0.54
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.25
%95 Ci[NR]
PlatformIllumina [450000] (imputed)
CNVN
Mapped traitchronic lymphocytic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000095
Study accessionGCST002299