Human SNP ID | rs1800469 |
---|---|
Human chromosome | chr19 |
Human SNP position | 41354391 |
Pig chromosome | chr6 |
Pig SNP position | 45142538 |
PubMed ID | 24836286 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24836286 |
Study | Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. |
Disease/Trait | Colorectal cancer |
Initial sample | 2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls |
Replication sample | 12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls |
Region | 19q13.2 |
Chromosome id | chr19 |
Chromosome position | 41354391 |
Reported gene | TGFB1, B9D2 |
Mapped gene | TGFB1 - B9D2 |
Upstream gene id | 7040 |
Downstream gene id | 80776 |
SNP gene ids | |
Upstream gene distance | 458 |
Downstream gene distance | 26 |
SNP risk allele | rs1800469-G |
SNPs | rs1800469 |
Merged | 0 |
SNP id current | 1800469 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (East Asian) |
Or beta | 1.09 |
%95 Ci | [1.06-1.12] |
Platform | Affymetrix, Illumina [2400000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002454 |