Human SNP ID | rs1789924 |
---|---|
Human chromosome | chr4 |
Human SNP position | 99353129 |
Pig chromosome | chr8 |
Pig SNP position | 130305796 |
PubMed ID | 21437268 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21437268 |
Study | A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium. |
Disease/Trait | Upper aerodigestive tract cancers |
Initial sample | 2,091 European ancestry cases, 8,334 European ancestry controls |
Replication sample | 6,574 European ancestry cases, 7,892 European ancestry controls |
Region | 4q23 |
Chromosome id | chr4 |
Chromosome position | 99353129 |
Reported gene | ADH1C |
Mapped gene | ADH1C - LOC102723576 |
Upstream gene id | 126 |
Downstream gene id | 102723576 |
SNP gene ids | |
Upstream gene distance | 84 |
Downstream gene distance | 25726 |
SNP risk allele | rs1789924-C |
SNPs | rs1789924 |
Merged | 0 |
SNP id current | 1789924 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.07-1.17] |
Platform | Illumina [294620] |
CNV | N |
Mapped trait | upper aerodigestive tract neoplasm |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004284 |
Study accession | GCST001011 |