SNP Detail For rs1789924
1.Mapping Information
Human SNP ID rs1789924
Human chromosome chr4
Human SNP position 99353129
Pig chromosome chr8
Pig SNP position 130305796
2.Annotation Information
PubMed ID21437268
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21437268
StudyA genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.
Disease/TraitUpper aerodigestive tract cancers
Initial sample2,091 European ancestry cases, 8,334 European ancestry controls
Replication sample6,574 European ancestry cases, 7,892 European ancestry controls
Region4q23
Chromosome idchr4
Chromosome position99353129
Reported geneADH1C
Mapped geneADH1C - LOC102723576
Upstream gene id126
Downstream gene id102723576
SNP gene ids
Upstream gene distance84
Downstream gene distance25726
SNP risk allelers1789924-C
SNPsrs1789924
Merged0
SNP id current1789924
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.12
%95 Ci[1.07-1.17]
PlatformIllumina [294620]
CNVN
Mapped traitupper aerodigestive tract neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004284
Study accessionGCST001011