Human SNP ID | rs1788776 |
---|---|
Human chromosome | chr18 |
Human SNP position | 23664073 |
Pig chromosome | chr6 |
Pig SNP position | 101117100 |
PubMed ID | 24256812 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24256812 |
Study | A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis. |
Disease/Trait | Amyotrophic lateral sclerosis (sporadic) |
Initial sample | 6,100 European ancestry cases, 7,125 European ancestry controls |
Replication sample | 2,074 European ancestry cases, 2,556 European ancestry controls |
Region | 18q11.2 |
Chromosome id | chr18 |
Chromosome position | 23664073 |
Reported gene | ANKRD29 |
Mapped gene | ANKRD29 - RPS10P27 |
Upstream gene id | 147463 |
Downstream gene id | 100129556 |
SNP gene ids | |
Upstream gene distance | 1181 |
Downstream gene distance | 8131 |
SNP risk allele | rs1788776-A |
SNPs | rs1788776 |
Merged | 0 |
SNP id current | 1788776 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.06-1.16] |
Platform | Illumina [~ 7000000] (imputed) |
CNV | N |
Mapped trait | sporadic amyotrophic lateral sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001357 |
Study accession | GCST002283 |