SNP Detail For rs1788776
1.Mapping Information
Human SNP ID rs1788776
Human chromosome chr18
Human SNP position 23664073
Pig chromosome chr6
Pig SNP position 101117100
2.Annotation Information
PubMed ID24256812
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24256812
StudyA genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.
Disease/TraitAmyotrophic lateral sclerosis (sporadic)
Initial sample6,100 European ancestry cases, 7,125 European ancestry controls
Replication sample2,074 European ancestry cases, 2,556 European ancestry controls
Region18q11.2
Chromosome idchr18
Chromosome position23664073
Reported geneANKRD29
Mapped geneANKRD29 - RPS10P27
Upstream gene id147463
Downstream gene id100129556
SNP gene ids
Upstream gene distance1181
Downstream gene distance8131
SNP risk allelers1788776-A
SNPsrs1788776
Merged0
SNP id current1788776
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.11
%95 Ci[1.06-1.16]
PlatformIllumina [~ 7000000] (imputed)
CNVN
Mapped traitsporadic amyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001357
Study accessionGCST002283