SNP Detail For rs17879437
1.Mapping Information
Human SNP ID rs17879437
Human chromosome chr19
Human SNP position 36151982
Pig chromosome chr6
Pig SNP position 40922413
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitNeuritic plaque
Initial sampleup to 4,232 individuals
Replication sampleNA
Region19q13.12
Chromosome idchr19
Chromosome position36151982
Reported geneCOX7A1
Mapped geneCOX7A1
Upstream gene id
Downstream gene id
SNP gene ids1346
Upstream gene distance
Downstream gene distance
SNP risk allelers17879437-C
SNPsrs17879437
Merged0
SNP id current17879437
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.7681
P value0.0000006
Pvalue mlog6.22184874961635
P value text(Case/control)
Or beta0.4789
%95 Ci[0.29-0.67] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitneuritic plaque measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006798
Study accessionGCST002592