SNP Detail For rs1787200
1.Mapping Information
Human SNP ID rs1787200
Human chromosome chr18
Human SNP position 49061284
Pig chromosome chr1
Pig SNP position 108236014
2.Annotation Information
PubMed ID21998595
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21998595
StudyIdentification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.
Disease/TraitHeight
Initial sample20,427 African ancestry individuals
Replication sampleUp to 16,436 African American individuals
Region18q21.1
Chromosome idchr18
Chromosome position49061284
Reported geneDYM
Mapped geneDYM
Upstream gene id
Downstream gene id
SNP gene ids54808
Upstream gene distance
Downstream gene distance
SNP risk allelers1787200-A
SNPsrs1787200
Merged0
SNP id current1787200
Contextintron_variant
Intergenic0
Allele frequency0.37
P value0.0000000001
Pvalue mlog10
P value text
Or beta0.053
%95 Ci[0.037-0.069] unit increase
PlatformAffymetrix, Illumina [3310998] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001263
PubMed ID22021425
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22021425
StudyGenome-wide association study of body height in African Americans: the Women__s Health Initiative SNP Health Association Resource (SHARe).
Disease/TraitHeight
Initial sample8,149 African American female individuals
Replication sampleUp to 20,809 African American and African ancestry individuals
Region18q21.1
Chromosome idchr18
Chromosome position49061284
Reported geneDYM
Mapped geneDYM
Upstream gene id
Downstream gene id
SNP gene ids54808
Upstream gene distance
Downstream gene distance
SNP risk allelers1787200-T
SNPsrs1787200
Merged0
SNP id current1787200
Contextintron_variant
Intergenic0
Allele frequency0.37
P value0.0000000007
Pvalue mlog9.15490195998574
P value text
Or beta0.044
%95 Ci[0.024-0.064] unit increase
PlatformAffymetrix [855034]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001290