SNP Detail For rs17834666
1.Mapping Information
Human SNP ID rs17834666
Human chromosome chr4
Human SNP position 180308047
Pig chromosome chr15
Pig SNP position 48452116
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (HVA)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region4q34.3
Chromosome idchr4
Chromosome position180308047
Reported geneintergenic
Mapped geneLOC105377567
Upstream gene id
Downstream gene id
SNP gene ids105377567
Upstream gene distance
Downstream gene distance
SNP risk allelers17834666-A
SNPsrs17834666
Merged0
SNP id current17834666
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.2201
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitHVA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005131
Study accessionGCST001824
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (HVA/MHPG ratio)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region4q34.3
Chromosome idchr4
Chromosome position180308047
Reported geneintergenic
Mapped geneLOC105377567
Upstream gene id
Downstream gene id
SNP gene ids105377567
Upstream gene distance
Downstream gene distance
SNP risk allelers17834666-A
SNPsrs17834666
Merged0
SNP id current17834666
Contextintergenic_variant
Intergenic0
Allele frequency
P value0.000001
Pvalue mlog6
P value text
Or beta0.307
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitHVA measurement, MHPG measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005131, http://www.ebi.ac.uk/efo/EFO_0005133
Study accessionGCST001823