Human SNP ID | rs17834666 |
---|---|
Human chromosome | chr4 |
Human SNP position | 180308047 |
Pig chromosome | chr15 |
Pig SNP position | 48452116 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (HVA) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 4q34.3 |
Chromosome id | chr4 |
Chromosome position | 180308047 |
Reported gene | intergenic |
Mapped gene | LOC105377567 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377567 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17834666-A |
SNPs | rs17834666 |
Merged | 0 |
SNP id current | 17834666 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.2201 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | HVA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005131 |
Study accession | GCST001824 |
PubMed ID | 23319000 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (HVA/MHPG ratio) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 4q34.3 |
Chromosome id | chr4 |
Chromosome position | 180308047 |
Reported gene | intergenic |
Mapped gene | LOC105377567 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377567 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17834666-A |
SNPs | rs17834666 |
Merged | 0 |
SNP id current | 17834666 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.307 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | HVA measurement, MHPG measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005131, http://www.ebi.ac.uk/efo/EFO_0005133 |
Study accession | GCST001823 |