SNP Detail For rs17830011
1.Mapping Information
Human SNP ID rs17830011
Human chromosome chr6
Human SNP position 159011534
Pig chromosome chr1
Pig SNP position 10073159
2.Annotation Information
PubMed ID25575512
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25575512
StudyEvidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.
Disease/TraitLipoprotein (a) - cholesterol levels
Initial sample1,376 Old Order Amish individuals
Replication sampleNA
Region6q25.3
Chromosome idchr6
Chromosome position159011534
Reported geneintergenic
Mapped geneLOC105378083
Upstream gene id
Downstream gene id
SNP gene ids105378083
Upstream gene distance
Downstream gene distance
SNP risk allelers17830011-?
SNPsrs17830011
Merged0
SNP id current17830011
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitlipoprotein A measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006925
Study accessionGCST002746