SNP Detail For rs17824933
1.Mapping Information
Human SNP ID rs17824933
Human chromosome chr11
Human SNP position 60993140
Pig chromosome chr2
Pig SNP position 10308151
2.Annotation Information
PubMed ID19525953
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19525953
StudyMeta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
Disease/TraitMultiple sclerosis
Initial sample2,624 European ancestry cases, 7,220 European ancestry controls
Replication sample2,215 European ancestry cases, 2,116 European ancestry controls
Region11q12.2
Chromosome idchr11
Chromosome position60993140
Reported geneCD6
Mapped geneCD6
Upstream gene id
Downstream gene id
SNP gene ids923
Upstream gene distance
Downstream gene distance
SNP risk allelers17824933-G
SNPsrs17824933
Merged0
SNP id current17824933
Contextintron_variant
Intergenic0
Allele frequency0.25
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.18
%95 Ci[1.07-1.30]
PlatformAffymetrix, Illumina [~ 2560000] (imputed)
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000424