Human SNP ID | rs17818859 |
---|---|
Human chromosome | chr2 |
Human SNP position | 133697669 |
Pig chromosome | chr15 |
Pig SNP position | 20807297 |
PubMed ID | 25188341 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25188341 |
Study | Genome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias. |
Disease/Trait | Neurofibrillary tangles |
Initial sample | up to 4,707 individuals |
Replication sample | NA |
Region | 2q21.2 |
Chromosome id | chr2 |
Chromosome position | 133697669 |
Reported gene | intergenic |
Mapped gene | NCKAP5 - LOC105373626 |
Upstream gene id | 344148 |
Downstream gene id | 105373626 |
SNP gene ids | |
Upstream gene distance | 22746 |
Downstream gene distance | 229666 |
SNP risk allele | rs17818859-C |
SNPs | rs17818859 |
Merged | 0 |
SNP id current | 17818859 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.9858 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (Ordinal I) |
Or beta | 2.5604 |
%95 Ci | [1.45-3.68] unit increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | neurofibrilliary tangles measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006797 |
Study accession | GCST002594 |