SNP Detail For rs17818859
1.Mapping Information
Human SNP ID rs17818859
Human chromosome chr2
Human SNP position 133697669
Pig chromosome chr15
Pig SNP position 20807297
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitNeurofibrillary tangles
Initial sampleup to 4,707 individuals
Replication sampleNA
Region2q21.2
Chromosome idchr2
Chromosome position133697669
Reported geneintergenic
Mapped geneNCKAP5 - LOC105373626
Upstream gene id344148
Downstream gene id105373626
SNP gene ids
Upstream gene distance22746
Downstream gene distance229666
SNP risk allelers17818859-C
SNPsrs17818859
Merged0
SNP id current17818859
Contextintergenic_variant
Intergenic1
Allele frequency0.9858
P value0.000007
Pvalue mlog5.15490195998574
P value text(Ordinal I)
Or beta2.5604
%95 Ci[1.45-3.68] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitneurofibrilliary tangles measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006797
Study accessionGCST002594