SNP Detail For rs17807909
1.Mapping Information
Human SNP ID rs17807909
Human chromosome chr11
Human SNP position 84624623
Pig chromosome chr9
Pig SNP position 20936354
2.Annotation Information
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitMild influenza (H1N1) infection
Initial sample107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region11q14.1
Chromosome idchr11
Chromosome position84624623
Reported geneDLG2
Mapped geneDLG2
Upstream gene id
Downstream gene id
SNP gene ids1740
Upstream gene distance
Downstream gene distance
SNP risk allelers17807909-?
SNPsrs17807909
Merged
SNP id current17807909
Contextintron_variant
Intergenic0
Allele frequency0.01117
P value2E-19
Pvalue mlog18.698970004336
P value text
Or beta13.66
%95 Ci[12.94-14.38]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003124
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitInfluenza A (H1N1) infection
Initial sample49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region11q14.1
Chromosome idchr11
Chromosome position84624623
Reported geneDLG2
Mapped geneDLG2
Upstream gene id
Downstream gene id
SNP gene ids1740
Upstream gene distance
Downstream gene distance
SNP risk allelers17807909-?
SNPsrs17807909
Merged
SNP id current17807909
Contextintron_variant
Intergenic0
Allele frequency0.01117
P value0.000000000000005
Pvalue mlog14.3010299956639
P value text
Or beta10.09
%95 Ci[5.018-20.3]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003125