SNP Detail For rs17807624
1.Mapping Information
Human SNP ID rs17807624
Human chromosome chr8
Human SNP position 11605506
Pig chromosome chr14
Pig SNP position 15970134
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position11605506
Reported geneIntergenic
Mapped geneLINC00208 - LOC105379242
Upstream gene id83655
Downstream gene id105379242
SNP gene ids
Upstream gene distance24165
Downstream gene distance26699
SNP risk allelers17807624-T
SNPsrs17807624
Merged0
SNP id current17807624
Contextintergenic_variant
Intergenic1
Allele frequency0.64
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.31
%95 Ci[1.17-1.45]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252