SNP Detail For rs17783561
1.Mapping Information
Human SNP ID rs17783561
Human chromosome chr10
Human SNP position 109211677
Pig chromosome chr14
Pig SNP position 130612188
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region10q25.1
Chromosome idchr10
Chromosome position109211677
Reported geneNR
Mapped geneLOC105378478 - PHB2P1
Upstream gene id105378478
Downstream gene id645318
SNP gene ids
Upstream gene distance450053
Downstream gene distance316317
SNP risk allelers17783561-T
SNPsrs17783561
Merged0
SNP id current17783561
Contextintergenic_variant
Intergenic1
Allele frequency0.135585937974119
P value0.000006
Pvalue mlog5.22184874961635
P value text(IGP56)
Or beta0.2748
%95 Ci[0.16-0.39] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848