SNP Detail For rs17779747
1.Mapping Information
Human SNP ID rs17779747
Human chromosome chr17
Human SNP position 70498851
Pig chromosome chr12
Pig SNP position 10370258
2.Annotation Information
PubMed ID19305409
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19305409
StudyCommon variants at ten loci modulate the QT interval duration in the QTSCD Study.
Disease/TraitQT interval
Initial sample15,842 European ancestry individuals
Replication sampleup to 13,602 individuals
Region17q24.3
Chromosome idchr17
Chromosome position70498851
Reported geneKCNJ2
Mapped geneCALM2P1 - LOC105371884
Upstream gene id100128390
Downstream gene id105371884
SNP gene ids
Upstream gene distance256473
Downstream gene distance312620
SNP risk allelers17779747-T
SNPsrs17779747
Merged0
SNP id current17779747
Contextintergenic_variant
Intergenic1
Allele frequency0.35
P value0.000000000006
Pvalue mlog11.2218487496163
P value text
Or beta1.02
%95 Ci[0.53-1.51] ms decrease
PlatformAffymetrix, Illumina [2557000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST000364