Human SNP ID | rs17779747 |
---|---|
Human chromosome | chr17 |
Human SNP position | 70498851 |
Pig chromosome | chr12 |
Pig SNP position | 10370258 |
PubMed ID | 19305409 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19305409 |
Study | Common variants at ten loci modulate the QT interval duration in the QTSCD Study. |
Disease/Trait | QT interval |
Initial sample | 15,842 European ancestry individuals |
Replication sample | up to 13,602 individuals |
Region | 17q24.3 |
Chromosome id | chr17 |
Chromosome position | 70498851 |
Reported gene | KCNJ2 |
Mapped gene | CALM2P1 - LOC105371884 |
Upstream gene id | 100128390 |
Downstream gene id | 105371884 |
SNP gene ids | |
Upstream gene distance | 256473 |
Downstream gene distance | 312620 |
SNP risk allele | rs17779747-T |
SNPs | rs17779747 |
Merged | 0 |
SNP id current | 17779747 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.000000000006 |
Pvalue mlog | 11.2218487496163 |
P value text | |
Or beta | 1.02 |
%95 Ci | [0.53-1.51] ms decrease |
Platform | Affymetrix, Illumina [2557000] (imputed) |
CNV | N |
Mapped trait | QT interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682 |
Study accession | GCST000364 |