SNP Detail For rs1777672
1.Mapping Information
Human SNP ID rs1777672
Human chromosome chr13
Human SNP position 35603682
Pig chromosome chr11
Pig SNP position 11739208
2.Annotation Information
PubMed ID20041166
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20041166
StudyCommon genetic variation and the control of HIV-1 in humans.
Disease/TraitHIV-1 control
Initial sample2,362 European ancestry cases
Replication sampleNA
Region13q13.3
Chromosome idchr13
Chromosome position35603682
Reported geneintergenic
Mapped geneNBEA
Upstream gene id
Downstream gene id
SNP gene ids26960
Upstream gene distance
Downstream gene distance
SNP risk allelers1777672-?
SNPsrs1777672
Merged0
SNP id current1777672
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text(progression)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000549