SNP Detail For rs1776421
1.Mapping Information
Human SNP ID rs1776421
Human chromosome chr1
Human SNP position 53418785
Pig chromosome chr6
Pig SNP position 146529773
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region1p32.3
Chromosome idchr1
Chromosome position53418785
Reported geneNR
Mapped geneLOC102724125
Upstream gene id
Downstream gene id
SNP gene ids102724125
Upstream gene distance
Downstream gene distance
SNP risk allelers1776421-?
SNPsrs1776421
Merged0
SNP id current1776421
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279