SNP Detail For rs17747401
1.Mapping Information
Human SNP ID rs17747401
Human chromosome chr10
Human SNP position 74640406
Pig chromosome chr14
Pig SNP position 83390591
2.Annotation Information
PubMed ID25108383
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25108383
StudyGenome-wide association analyses identify variants in developmental genes associated with hypospadias.
Disease/TraitHypospadias
Initial sample1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls
Replication sample1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls
Region10q22.2
Chromosome idchr10
Chromosome position74640406
Reported geneADK
Mapped geneADK
Upstream gene id
Downstream gene id
SNP gene ids132
Upstream gene distance
Downstream gene distance
SNP risk allelers17747401-T
SNPsrs17747401
Merged0
SNP id current17747401
Contextintron_variant
Intergenic0
Allele frequency0.378
P value0.0000001
Pvalue mlog7
P value text
Or beta1.2
%95 Ci[NR]
PlatformIllumina [8207076] (imputed)
CNVN
Mapped traithypospadias
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004209
Study accessionGCST002563