SNP Detail For rs17736906
1.Mapping Information
Human SNP ID rs17736906
Human chromosome chr7
Human SNP position 53914933
Pig chromosome chr9
Pig SNP position 152822901
2.Annotation Information
PubMed ID24556642
JournalCaries Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24556642
StudyGenome-Wide Association Study of Primary Dentition Pit-and-Fissure and Smooth Surface Caries.
Disease/TraitPit-and-Fissure caries
Initial sample979 European ancestry individuals
Replication sampleNA
Region7p11.2
Chromosome idchr7
Chromosome position53914933
Reported geneFLJ45974
Mapped geneLOC102723574 - HPVC1
Upstream gene id102723574
Downstream gene id3262
SNP gene ids
Upstream gene distance51415
Downstream gene distance286291
SNP risk allelers17736906-A
SNPsrs17736906
Merged0
SNP id current17736906
Contextintergenic_variant
Intergenic1
Allele frequency0.1558
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.7446
%95 Ci[NR] unit decrease
PlatformIllumina [1216074] (imputed)
CNVN
Mapped traitpit and fissure surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006338
Study accessionGCST002358