SNP Detail For rs17727261
1.Mapping Information
Human SNP ID rs17727261
Human chromosome chr2
Human SNP position 124524333
Pig chromosome chr15
Pig SNP position 31678639
2.Annotation Information
PubMed ID19721433
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/19721433
StudyGenome-wide pharmacogenomic analysis of response to treatment with antipsychotics.
Disease/TraitResponse to antipsychotic treatment
Initial sample494 European ancestry cases, 244 African American and other ancestry cases
Replication sampleNA
Region2q14.3
Chromosome idchr2
Chromosome position124524333
Reported geneCNTNAP5
Mapped geneCNTNAP5
Upstream gene id
Downstream gene id
SNP gene ids129684
Upstream gene distance
Downstream gene distance
SNP risk allelers17727261-?
SNPsrs17727261
Merged0
SNP id current17727261
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text(risperidone)
Or beta10
%95 Ci[NR] % variance
PlatformAffymetrix, Perlegen [492900]
CNVN
Mapped traitresponse to risperidone
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097336
Study accessionGCST000473