SNP Detail For rs17718828
1.Mapping Information
Human SNP ID rs17718828
Human chromosome chr13
Human SNP position 74553977
Pig chromosome chr11
Pig SNP position 51418001
2.Annotation Information
PubMed ID22359512
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22359512
StudyGenome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.
Disease/TraitPhospholipid levels (plasma)
Initial sample4,034 European ancestry individuals
Replication sampleNA
Region13q22.1
Chromosome idchr13
Chromosome position74553977
Reported geneKLF12
Mapped geneLINC00347
Upstream gene id
Downstream gene id
SNP gene ids338864
Upstream gene distance
Downstream gene distance
SNP risk allelers17718828-?
SNPsrs17718828
Merged0
SNP id current17718828
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text(levels)
Or beta0.8
%95 Ci[NR] % increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001414