Human SNP ID | rs17718828 |
---|---|
Human chromosome | chr13 |
Human SNP position | 74553977 |
Pig chromosome | chr11 |
Pig SNP position | 51418001 |
PubMed ID | 22359512 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22359512 |
Study | Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 4,034 European ancestry individuals |
Replication sample | NA |
Region | 13q22.1 |
Chromosome id | chr13 |
Chromosome position | 74553977 |
Reported gene | KLF12 |
Mapped gene | LINC00347 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 338864 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17718828-? |
SNPs | rs17718828 |
Merged | 0 |
SNP id current | 17718828 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (levels) |
Or beta | 0.8 |
%95 Ci | [NR] % increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001414 |