SNP Detail For rs1770678
1.Mapping Information
Human SNP ID rs1770678
Human chromosome chr1
Human SNP position 82299369
Pig chromosome chr6
Pig SNP position 121669225
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position82299369
Reported geneLPHN2
Mapped geneADGRL2 - LOC105378814
Upstream gene id23266
Downstream gene id105378814
SNP gene ids
Upstream gene distance306631
Downstream gene distance322161
SNP risk allelers170678-G
SNPsrs1770678
Merged0
SNP id current1770678
Contextintergenic_variant
Intergenic1
Allele frequency0.07
P value0.000007
Pvalue mlog5.15490195998574
P value text(TBF-b1 )
Or beta0.03
%95 Ci[NR] pg/mL increase
PlatformIllumina [899892]
CNVN
Mapped traittransforming growth factor beta measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004818
Study accessionGCST001762