SNP Detail For rs17695092
1.Mapping Information
Human SNP ID rs17695092
Human chromosome chr5
Human SNP position 173910850
Pig chromosome chr16
Pig SNP position 54857402
2.Annotation Information
PubMed ID23128233
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/23128233
StudyHost-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Disease/TraitCrohn__s disease
Initial sampleUp to 12,924 European ancestry cases, up to 21,442 European ancestry controls
Replication sampleUp to 25,683 European ancestry cases, up to 17,015 European ancestry controls
Region5q35.2
Chromosome idchr5
Chromosome position173910850
Reported geneCPEB4
Mapped geneCPEB4
Upstream gene id
Downstream gene id
SNP gene ids80315
Upstream gene distance
Downstream gene distance
SNP risk allelers17695092-T
SNPsrs17695092
Merged0
SNP id current17695092
Contextintron_variant
Intergenic0
Allele frequency0.703
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.095
%95 Ci[1.055-1.136]
PlatformAffymetrix, Illumina [1230000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001729