SNP Detail For rs17694493
1.Mapping Information
Human SNP ID rs17694493
Human chromosome chr9
Human SNP position 22041999
Pig chromosome chr1
Pig SNP position 223931621
2.Annotation Information
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region9p21.3
Chromosome idchr9
Chromosome position22041999
Reported geneCDKN2B-AS1
Mapped geneCDKN2B-AS1
Upstream gene id
Downstream gene id
SNP gene ids100048912
Upstream gene distance
Downstream gene distance
SNP risk allelers17694493-G
SNPsrs17694493
Merged0
SNP id current17694493
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.000001
Pvalue mlog6
P value text
Or beta1.08
%95 Ci[1.05-1.11]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region9p21.3
Chromosome idchr9
Chromosome position22041999
Reported geneCDKN2B-AS1
Mapped geneCDKN2B-AS1
Upstream gene id
Downstream gene id
SNP gene ids100048912
Upstream gene distance
Downstream gene distance
SNP risk allelers17694493-G
SNPsrs17694493
Merged0
SNP id current17694493
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.00000004
Pvalue mlog7.39794000867203
P value text(EA)
Or beta1.1
%95 Ci[1.06-1.13]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606