Human SNP ID | rs17691888 |
---|---|
Human chromosome | chr10 |
Human SNP position | 18445599 |
Pig chromosome | chr10 |
Pig SNP position | 49514960 |
PubMed ID | 23974872 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23974872 |
Study | Genome-wide association analysis identifies 13 new risk loci for schizophrenia. |
Disease/Trait | Schizophrenia |
Initial sample | 5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls |
Replication sample | 4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios |
Region | 10p12.31 |
Chromosome id | chr10 |
Chromosome position | 18445599 |
Reported gene | NSUN6, CACNB2 |
Mapped gene | CACNB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 783 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17691888-G |
SNPs | rs17691888 |
Merged | 0 |
SNP id current | 17691888 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.886 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.21] |
Platform | Affymetrix, Illumina [9871789] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST002149 |