SNP Detail For rs17691888
1.Mapping Information
Human SNP ID rs17691888
Human chromosome chr10
Human SNP position 18445599
Pig chromosome chr10
Pig SNP position 49514960
2.Annotation Information
PubMed ID23974872
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23974872
StudyGenome-wide association analysis identifies 13 new risk loci for schizophrenia.
Disease/TraitSchizophrenia
Initial sample5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls
Replication sample4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios
Region10p12.31
Chromosome idchr10
Chromosome position18445599
Reported geneNSUN6, CACNB2
Mapped geneCACNB2
Upstream gene id
Downstream gene id
SNP gene ids783
Upstream gene distance
Downstream gene distance
SNP risk allelers17691888-G
SNPsrs17691888
Merged0
SNP id current17691888
Contextintron_variant
Intergenic0
Allele frequency0.886
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.16
%95 Ci[1.11-1.21]
PlatformAffymetrix, Illumina [9871789]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002149