SNP Detail For rs17689882
1.Mapping Information
Human SNP ID rs17689882
Human chromosome chr17
Human SNP position 45829462
Pig chromosome chr12
Pig SNP position 17373694
2.Annotation Information
PubMed ID25607358
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25607358
StudyCommon genetic variants influence human subcortical brain structures.
Disease/TraitSubcortical brain region volumes
Initial sampleup to 13,171 European ancestry individuals
Replication sampleup to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals
Region17q21.31
Chromosome idchr17
Chromosome position45829462
Reported geneCRHR1
Mapped geneMGC57346-CRHR1, CRHR1
Upstream gene id
Downstream gene id
SNP gene ids104909134, 1394
Upstream gene distance
Downstream gene distance
SNP risk allelers17689882-A
SNPsrs17689882
Merged0
SNP id current17689882
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.000000008
Pvalue mlog8.09691001300805
P value text(Intracranial volume, EA)
Or beta13460.47
%95 Ci[8891.61-18029.33] mm3 decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitintra cranial volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004886
Study accessionGCST002756