SNP Detail For rs17685410
1.Mapping Information
Human SNP ID rs17685410
Human chromosome chr8
Human SNP position 2165853
Pig chromosome chr15
Pig SNP position 38142720
2.Annotation Information
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitToenail selenium levels
Initial sample4,162 European ancestry individuals
Replication sampleNA
Region8p23.3
Chromosome idchr8
Chromosome position2165853
Reported geneMYOM2, CSMD1, KBTBD11, ARHGEF10
Mapped geneLOC105377781
Upstream gene id
Downstream gene id
SNP gene ids105377781
Upstream gene distance
Downstream gene distance
SNP risk allelers17685410-A
SNPsrs17685410
Merged0
SNP id current17685410
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.3
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.018
%95 Ci[0.010-0.026] unit increase
PlatformAffymetrix, Illumina [2378986] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002671