Human SNP ID | rs17685410 |
---|---|
Human chromosome | chr8 |
Human SNP position | 2165853 |
Pig chromosome | chr15 |
Pig SNP position | 38142720 |
PubMed ID | 25343990 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25343990 |
Study | Genome-wide association study of selenium concentrations. |
Disease/Trait | Toenail selenium levels |
Initial sample | 4,162 European ancestry individuals |
Replication sample | NA |
Region | 8p23.3 |
Chromosome id | chr8 |
Chromosome position | 2165853 |
Reported gene | MYOM2, CSMD1, KBTBD11, ARHGEF10 |
Mapped gene | LOC105377781 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377781 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17685410-A |
SNPs | rs17685410 |
Merged | 0 |
SNP id current | 17685410 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.3 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.018 |
%95 Ci | [0.010-0.026] unit increase |
Platform | Affymetrix, Illumina [2378986] (imputed) |
CNV | N |
Mapped trait | selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006331 |
Study accession | GCST002671 |