Human SNP ID | rs17674580 |
---|---|
Human chromosome | chr18 |
Human SNP position | 45729946 |
Pig chromosome | chr1 |
Pig SNP position | 105423628 |
PubMed ID | 21750109 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21750109 |
Study | European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene. |
Disease/Trait | Bladder cancer |
Initial sample | 2,234 European ancestry cases, 41,603 European ancestry controls |
Replication sample | 3,371 European ancestry cases, 10,261 European ancestry controls, 269 Iranian ancestry cases, 246 Iranian ancestry controls |
Region | 18q12.3 |
Chromosome id | chr18 |
Chromosome position | 45729946 |
Reported gene | SLC14A1 |
Mapped gene | SLC14A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6563 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17674580-T |
SNPs | rs17674580 |
Merged | 0 |
SNP id current | 17674580 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.00000000008 |
Pvalue mlog | 10.096910013008 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.11-1.22] |
Platform | Illumina [5340737] (imputed) |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST001153 |