SNP Detail For rs17674580
1.Mapping Information
Human SNP ID rs17674580
Human chromosome chr18
Human SNP position 45729946
Pig chromosome chr1
Pig SNP position 105423628
2.Annotation Information
PubMed ID21750109
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21750109
StudyEuropean genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene.
Disease/TraitBladder cancer
Initial sample2,234 European ancestry cases, 41,603 European ancestry controls
Replication sample3,371 European ancestry cases, 10,261 European ancestry controls, 269 Iranian ancestry cases, 246 Iranian ancestry controls
Region18q12.3
Chromosome idchr18
Chromosome position45729946
Reported geneSLC14A1
Mapped geneSLC14A1
Upstream gene id
Downstream gene id
SNP gene ids6563
Upstream gene distance
Downstream gene distance
SNP risk allelers17674580-T
SNPsrs17674580
Merged0
SNP id current17674580
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.33
P value0.00000000008
Pvalue mlog10.096910013008
P value text
Or beta1.17
%95 Ci[1.11-1.22]
PlatformIllumina [5340737] (imputed)
CNVN
Mapped traitbladder carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000292
Study accessionGCST001153