Human SNP ID | rs17665162 |
---|---|
Human chromosome | chr6 |
Human SNP position | 50307545 |
Pig chromosome | chr7 |
Pig SNP position | 50659998 |
PubMed ID | 25673413 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 6p12.3 |
Chromosome id | chr6 |
Chromosome position | 50307545 |
Reported gene | DEFB112 |
Mapped gene | LOC100505985 - TFAP2D |
Upstream gene id | 100505985 |
Downstream gene id | 83741 |
SNP gene ids | |
Upstream gene distance | 208262 |
Downstream gene distance | 405999 |
SNP risk allele | rs17665162-C |
SNPs | rs17665162 |
Merged | 0 |
SNP id current | 17665162 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.058 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA) |
Or beta | 0.033 |
%95 Ci | [0.02-0.046] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 6p12.3 |
Chromosome id | chr6 |
Chromosome position | 50307545 |
Reported gene | DEFB112 |
Mapped gene | LOC100505985 - TFAP2D |
Upstream gene id | 100505985 |
Downstream gene id | 83741 |
SNP gene ids | |
Upstream gene distance | 208262 |
Downstream gene distance | 405999 |
SNP risk allele | rs17665162-C |
SNPs | rs17665162 |
Merged | 0 |
SNP id current | 17665162 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.058 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.032 |
%95 Ci | [0.019-0.045] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |