SNP Detail For rs17664743
1.Mapping Information
Human SNP ID rs17664743
Human chromosome chr7
Human SNP position 50214301
Pig chromosome chr9
Pig SNP position 149931245
2.Annotation Information
PubMed ID23817569
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23817569
StudyA genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.
Disease/TraitSelf-reported allergy
Initial sample53,862 European ancestry individuals
Replication sampleNA
Region7p12.2
Chromosome idchr7
Chromosome position50214301
Reported geneintergenic
Mapped geneC7orf72 - IKZF1
Upstream gene id100130988
Downstream gene id10320
SNP gene ids
Upstream gene distance55045
Downstream gene distance89164
SNP risk allelers17664743-A
SNPsrs17664743
Merged0
SNP id current17664743
Contextregulatory_region_variant
Intergenic1
Allele frequency0.2244
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.0665
%95 Ci[0.038-0.095] unit increase
PlatformIllumina [2400000] (imputed)
CNVN
Mapped traitallergy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003785
Study accessionGCST002083