SNP Detail For rs17655948
1.Mapping Information
Human SNP ID rs17655948
Human chromosome chr13
Human SNP position 105415571
Pig chromosome chr11
Pig SNP position 80685205
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (DPAL)
Initial sampleup to 2,501 European ancestry individuals
Replication sampleNA
Region13q33.2
Chromosome idchr13
Chromosome position105415571
Reported geneDAOA
Mapped geneLOC105370344 - DAOA-AS1
Upstream gene id105370344
Downstream gene id282706
SNP gene ids
Upstream gene distance1347
Downstream gene distance43484
SNP risk allelers17655948-T
SNPsrs17655948
Merged0
SNP id current17655948
Contextintergenic_variant
Intergenic1
Allele frequency0.64
P value0.000007
Pvalue mlog5.15490195998574
P value text(Age 20-60 years)
Or beta0.1638
%95 Ci[0.093-0.234] unit increase
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002129