Human SNP ID | rs17655730 |
---|---|
Human chromosome | chr11 |
Human SNP position | 270715 |
Pig chromosome | chr2 |
Pig SNP position | 162142919 |
PubMed ID | 22139419 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/22139419 |
Study | New gene functions in megakaryopoiesis and platelet formation. |
Disease/Trait | Mean platelet volume |
Initial sample | 16,948 European ancestry individuals, 1,652 Val Borbera individuals |
Replication sample | Up to 18,838 European ancestry individuals |
Region | 11p15.5 |
Chromosome id | chr11 |
Chromosome position | 270715 |
Reported gene | PSMD13, NLRP6 |
Mapped gene | PSMD13 - NLRP6 |
Upstream gene id | 5719 |
Downstream gene id | 171389 |
SNP gene ids | |
Upstream gene distance | 17731 |
Downstream gene distance | 7650 |
SNP risk allele | rs17655730-T |
SNPs | rs17655730 |
Merged | 0 |
SNP id current | 17655730 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | |
Or beta | 0.01 |
%95 Ci | [0.008-0.012] ln(fl) increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | mean platelet volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004584 |
Study accession | GCST001335 |