SNP Detail For rs17651189
1.Mapping Information
Human SNP ID rs17651189
Human chromosome chr22
Human SNP position 24448915
Pig chromosome chr14
Pig SNP position 52936297
2.Annotation Information
PubMed ID24927181
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/24927181
StudyGenome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
Disease/TraitAcne (severe)
Initial sample1,893 European ancestry cases, 5,132 European ancestry controls
Replication sample2,063 European ancestry cases, 1,970 European ancestry controls
Region22q11.23
Chromosome idchr22
Chromosome position24448915
Reported geneSNRPD3, SPECC1L, TMEM211, TOP1P2, UNQ2565, UPB1, GSTT1, SUSD2, GGT5, ADORA2A, ADORA2A-AS1, BCRP3, CABIN1, DKFZp434K191, DQ570150, DQ571461, DQ576853, EU036692, FAM211B, GGT1, GSTTP2, GUCD1, LOC391322, PIWIL3, POM121L10P, POM121L9P, SGSM1
Mapped geneADORA2A-AS1
Upstream gene id
Downstream gene id
SNP gene ids646023
Upstream gene distance
Downstream gene distance
SNP risk allelers17651189-C
SNPsrs17651189
Merged0
SNP id current17651189
Contextintron_variant
Intergenic0
Allele frequency0.0507
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.44
%95 Ci[1.24-1.68]
PlatformIllumina [7300000] (imputed)
CNVN
Mapped traitacne
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003894
Study accessionGCST002481