SNP Detail For rs17650440
1.Mapping Information
Human SNP ID rs17650440
Human chromosome chr15
Human SNP position 52211839
Pig chromosome chr1
Pig SNP position 132607990
2.Annotation Information
PubMed ID25524916
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/25524916
StudyGenetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.
Disease/TraitGlucose homeostasis traits
Initial sampleup to 4,176 Mexican American individuals
Replication sampleNA
Region15q21.2
Chromosome idchr15
Chromosome position52211839
Reported geneMYO5C
Mapped geneMYO5C
Upstream gene id
Downstream gene id
SNP gene ids55930
Upstream gene distance
Downstream gene distance
SNP risk allelers17650440-?
SNPsrs17650440
Merged0
SNP id current17650440
Contextmissense_variant
Intergenic0
Allele frequency
P value0.000006
Pvalue mlog5.22184874961635
P value text(SG)
Or beta2.09
%95 Ci[1.23-2.95] unit increase
PlatformIllumina [693128]
CNVN
Mapped traitglucose homeostasis measurement, glucose effectiveness measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006896, http://www.ebi.ac.uk/efo/EFO_0006833
Study accessionGCST002726