SNP Detail For rs17646946
1.Mapping Information
Human SNP ID rs17646946
Human chromosome chr1
Human SNP position 152090291
Pig chromosome chr4
Pig SNP position 106137613
2.Annotation Information
PubMed ID20585627
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20585627
StudyWeb-based, participant-driven studies yield novel genetic associations for common traits.
Disease/TraitCommon traits (Other)
Initial sample9,126 European ancestry individuals
Replication sampleNA
Region1q21.3
Chromosome idchr1
Chromosome position152090291
Reported geneTCHH
Mapped geneTCHHL1 - TCHH
Upstream gene id126637
Downstream gene id7062
SNP gene ids
Upstream gene distance1227
Downstream gene distance16026
SNP risk allelers17646946-A
SNPsrs17646946
Merged0
SNP id current17646946
Contextupstream_gene_variant
Intergenic1
Allele frequency0.2
P value2E-42
Pvalue mlog41.698970004336
P value text(hair curl)
Or beta0.29
%95 Ci[NR] unit decrease
PlatformIllumina [535076]
CNVN
Mapped traithair morphology
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005038
Study accessionGCST000706