SNP Detail For rs17641524
1.Mapping Information
Human SNP ID rs17641524
Human chromosome chr1
Human SNP position 197735587
Pig chromosome chr10
Pig SNP position 25207324
2.Annotation Information
PubMed ID26394269
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26394269
StudyInternational genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.
Disease/TraitPrimary biliary cirrhosis
Initial sample2,764 European ancestry cases, 10,475 European ancestry controls
Replication sample3,716 European ancestry cases, 4,261 European ancestry controls
Region1q31.3
Chromosome idchr1
Chromosome position197735587
Reported geneDENND1B
Mapped geneDENND1B
Upstream gene id
Downstream gene id
SNP gene ids163486
Upstream gene distance
Downstream gene distance
SNP risk allelers17641524-T
SNPsrs17641524
Merged
SNP id current17641524
Contextsplice_region_variant
Intergenic0
Allele frequency0.17
P value0.00000000001
Pvalue mlog11
P value text
Or beta1.2987013
%95 CiNR
PlatformIllumina [1143634] (imputed)
CNVN
Mapped traitprimary biliary cirrhosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001486
Study accessionGCST003129