Human SNP ID | rs17641524 |
---|---|
Human chromosome | chr1 |
Human SNP position | 197735587 |
Pig chromosome | chr10 |
Pig SNP position | 25207324 |
PubMed ID | 26394269 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26394269 |
Study | International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways. |
Disease/Trait | Primary biliary cirrhosis |
Initial sample | 2,764 European ancestry cases, 10,475 European ancestry controls |
Replication sample | 3,716 European ancestry cases, 4,261 European ancestry controls |
Region | 1q31.3 |
Chromosome id | chr1 |
Chromosome position | 197735587 |
Reported gene | DENND1B |
Mapped gene | DENND1B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 163486 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17641524-T |
SNPs | rs17641524 |
Merged | |
SNP id current | 17641524 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | 0.17 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 1.2987013 |
%95 Ci | NR |
Platform | Illumina [1143634] (imputed) |
CNV | N |
Mapped trait | primary biliary cirrhosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001486 |
Study accession | GCST003129 |