SNP Detail For rs17639207
1.Mapping Information
Human SNP ID rs17639207
Human chromosome chr4
Human SNP position 135272185
Pig chromosome chr8
Pig SNP position 97277482
2.Annotation Information
PubMed ID23754948
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23754948
StudySex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.
Disease/TraitSexual dimorphism in anthropometric traits
Initial sampleup to 60,586 European ancestry males, up to 73,137 European ancestry females
Replication sampleup to 62,395 European ancestry males, up to 74,657 European ancestry females
Region4q28.3
Chromosome idchr4
Chromosome position135272185
Reported genePABPC4L
Mapped geneLOC105377439 - TARS2P1
Upstream gene id105377439
Downstream gene id100533844
SNP gene ids
Upstream gene distance148540
Downstream gene distance292709
SNP risk allelers17639207-T
SNPsrs17639207
Merged0
SNP id current17639207
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text(WCadjBMI, men)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2846694] (imputed)
CNVN
Mapped traitwaist circumference, sexual dimorphism, anthropometry
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004342, http://www.ebi.ac.uk/efo/EFO_0005951, http://www.ebi.ac.uk/efo/EFO_0004302
Study accessionGCST002063