SNP Detail For rs17636747
1.Mapping Information
Human SNP ID rs17636747
Human chromosome chr2
Human SNP position 105261413
Pig chromosome chr3
Pig SNP position 51796432
2.Annotation Information
PubMed ID23551011
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23551011
StudyGenome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.
Disease/TraitPreeclampsia
Initial sample21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position105261413
Reported geneTGFBRAP1
Mapped geneTGFBRAP1
Upstream gene id
Downstream gene id
SNP gene ids9392
Upstream gene distance
Downstream gene distance
SNP risk allelers17636747-?
SNPsrs17636747
Merged0
SNP id current17636747
Contextdownstream_gene_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Hispanic)
Or beta8.35
%95 Ci[3.41-20.46]
PlatformIllumina [2485249] (imputed)
CNVN
Mapped traitpreeclampsia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000668
Study accessionGCST001949