SNP Detail For rs17625382
1.Mapping Information
Human SNP ID rs17625382
Human chromosome chr10
Human SNP position 57812948
Pig chromosome chr14
Pig SNP position 101104829
2.Annotation Information
PubMed ID24962325
JournalDrug Alcohol Depend
Linkwww.ncbi.nlm.nih.gov/pubmed/24962325
StudyGenome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.
Disease/TraitAlcohol dependence (age at onset)
Initial sample685 European ancestry cases, 1,103 European ancestry controls from 118 families
Replication sampleNA
Region10q21.1
Chromosome idchr10
Chromosome position57812948
Reported geneNR
Mapped geneLOC105378314
Upstream gene id
Downstream gene id
SNP gene ids105378314
Upstream gene distance
Downstream gene distance
SNP risk allelers17625382-G
SNPsrs17625382
Merged0
SNP id current17625382
Contextintergenic_variant
Intergenic0
Allele frequency0.84
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.41
%95 Ci[1.27-1.55]
PlatformIllumina [4058415] (imputed)
CNVN
Mapped traitage at onset, alcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST002477