SNP Detail For rs17624523
1.Mapping Information
Human SNP ID rs17624523
Human chromosome chr2
Human SNP position 104542180
Pig chromosome JH118663-1
Pig SNP position 19605
2.Annotation Information
PubMed ID23006423
JournalBMC Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/23006423
StudyGenetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
Disease/TraitResponse to taxane treatment (docetaxel)
Initial sample96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position104542180
Reported genePOU3F3
Mapped geneLINC01102 - LOC105373524
Upstream gene id150568
Downstream gene id105373524
SNP gene ids
Upstream gene distance29423
Downstream gene distance38641
SNP risk allelers17624523-?
SNPsrs17624523
Merged0
SNP id current17624523
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1300000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001692