Human SNP ID | rs176095 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32190542 |
Pig chromosome | chr7 |
Pig SNP position | 28048241 |
PubMed ID | 23042114 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23042114 |
Study | Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population. |
Disease/Trait | Atopic dermatitis |
Initial sample | 1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls |
Replication sample | 1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32190542 |
Reported gene | GPSM3 |
Mapped gene | PBX2 - GPSM3 |
Upstream gene id | 5089 |
Downstream gene id | 63940 |
SNP gene ids | |
Upstream gene distance | 356 |
Downstream gene distance | 224 |
SNP risk allele | rs176095-T |
SNPs | rs176095 |
Merged | 0 |
SNP id current | 176095 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.81 |
P value | 8E-20 |
Pvalue mlog | 19.096910013008 |
P value text | |
Or beta | 1.4 |
%95 Ci | [1.30-1.51] |
Platform | Illumina [606164] |
CNV | N |
Mapped trait | atopic eczema |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274 |
Study accession | GCST001709 |
PubMed ID | 25574825 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Atopic dermatitis |
Initial sample | 2,079 European ancestry cases, 3,867 European ancestry controls |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32190542 |
Reported gene | GPSM3 |
Mapped gene | PBX2 - GPSM3 |
Upstream gene id | 5089 |
Downstream gene id | 63940 |
SNP gene ids | |
Upstream gene distance | 356 |
Downstream gene distance | 224 |
SNP risk allele | rs176095-G |
SNPs | rs176095 |
Merged | 0 |
SNP id current | 176095 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.3020833 |
%95 Ci | [1.18-1.44] |
Platform | Affymetrix, Illumina, Perlegen [up to 5493100] (imputed) |
CNV | N |
Mapped trait | atopic eczema |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274 |
Study accession | GCST002737 |