Human SNP ID | rs17609240 |
---|---|
Human chromosome | chr17 |
Human SNP position | 39954436 |
Pig chromosome | chr12 |
Pig SNP position | 22845006 |
PubMed ID | 19820697 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19820697 |
Study | A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. |
Disease/Trait | Hematological parameters |
Initial sample | 4,627 European ancestry individuals |
Replication sample | 9,316 European ancestry individuals |
Region | 17q21.1 |
Chromosome id | chr17 |
Chromosome position | 39954436 |
Reported gene | GSDMA, ORMDL3 |
Mapped gene | LRRC3C - GSDMA |
Upstream gene id | 100505591 |
Downstream gene id | 284110 |
SNP gene ids | |
Upstream gene distance | 9402 |
Downstream gene distance | 8537 |
SNP risk allele | rs17609240-G |
SNPs | rs17609240 |
Merged | 0 |
SNP id current | 17609240 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | (WBC) |
Or beta | 0.02 |
%95 Ci | [0.01-0.03] 10^9/l increase |
Platform | Affymetrix, Illumina [~ 2110000] (imputed) |
CNV | N |
Mapped trait | leukocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
Study accession | GCST000498 |