SNP Detail For rs17609240
1.Mapping Information
Human SNP ID rs17609240
Human chromosome chr17
Human SNP position 39954436
Pig chromosome chr12
Pig SNP position 22845006
2.Annotation Information
PubMed ID19820697
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19820697
StudyA genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.
Disease/TraitHematological parameters
Initial sample4,627 European ancestry individuals
Replication sample9,316 European ancestry individuals
Region17q21.1
Chromosome idchr17
Chromosome position39954436
Reported geneGSDMA, ORMDL3
Mapped geneLRRC3C - GSDMA
Upstream gene id100505591
Downstream gene id284110
SNP gene ids
Upstream gene distance9402
Downstream gene distance8537
SNP risk allelers17609240-G
SNPsrs17609240
Merged0
SNP id current17609240
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000000009
Pvalue mlog8.04575749056067
P value text(WBC)
Or beta0.02
%95 Ci[0.01-0.03] 10^9/l increase
PlatformAffymetrix, Illumina [~ 2110000] (imputed)
CNVN
Mapped traitleukocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004308
Study accessionGCST000498