SNP Detail For rs17608902
1.Mapping Information
Human SNP ID rs17608902
Human chromosome chr5
Human SNP position 128380874
Pig chromosome chr2
Pig SNP position 136598897
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine with aura
Initial sample5,118 European ancestry cases, 74,239 European ancestry controls
Replication sampleNA
Region5q23.3
Chromosome idchr5
Chromosome position128380874
Reported geneintergenic
Mapped geneFBN2
Upstream gene id
Downstream gene id
SNP gene ids2201
Upstream gene distance
Downstream gene distance
SNP risk allelers17608902-A
SNPsrs17608902
Merged0
SNP id current17608902
Contextintron_variant
Intergenic0
Allele frequency0.09
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.19
%95 Ci[1.10-1.28]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002080
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region5q23.3
Chromosome idchr5
Chromosome position128380874
Reported geneintergenic
Mapped geneFBN2
Upstream gene id
Downstream gene id
SNP gene ids2201
Upstream gene distance
Downstream gene distance
SNP risk allelers17608902-A
SNPsrs17608902
Merged0
SNP id current17608902
Contextintron_variant
Intergenic0
Allele frequency0.09
P value0.0000001
Pvalue mlog7
P value text
Or beta1.25
%95 Ci[1.15-1.35]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079