Human SNP ID | rs17608902 |
---|---|
Human chromosome | chr5 |
Human SNP position | 128380874 |
Pig chromosome | chr2 |
Pig SNP position | 136598897 |
PubMed ID | 23793025 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine with aura |
Initial sample | 5,118 European ancestry cases, 74,239 European ancestry controls |
Replication sample | NA |
Region | 5q23.3 |
Chromosome id | chr5 |
Chromosome position | 128380874 |
Reported gene | intergenic |
Mapped gene | FBN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2201 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17608902-A |
SNPs | rs17608902 |
Merged | 0 |
SNP id current | 17608902 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.09 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.10-1.28] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002080 |
PubMed ID | 23793025 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine - clinic-based |
Initial sample | 5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls |
Replication sample | NA |
Region | 5q23.3 |
Chromosome id | chr5 |
Chromosome position | 128380874 |
Reported gene | intergenic |
Mapped gene | FBN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2201 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17608902-A |
SNPs | rs17608902 |
Merged | 0 |
SNP id current | 17608902 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.09 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.15-1.35] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002079 |