Human SNP ID | rs17605562 |
---|---|
Human chromosome | chr2 |
Human SNP position | 11897053 |
Pig chromosome | chr3 |
Pig SNP position | 133609229 |
PubMed ID | 19896111 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19896111 |
Study | Common variants in the trichohyalin gene are associated with straight hair in Europeans. |
Disease/Trait | Hair morphology |
Initial sample | 4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals |
Replication sample | NA |
Region | 2p25.1 |
Chromosome id | chr2 |
Chromosome position | 11897053 |
Reported gene | AC096559.2 |
Mapped gene | LOC105373430 - LOC100506457 |
Upstream gene id | 105373430 |
Downstream gene id | 100506457 |
SNP gene ids | |
Upstream gene distance | 30776 |
Downstream gene distance | 110063 |
SNP risk allele | rs17605562-T |
SNPs | rs17605562 |
Merged | 0 |
SNP id current | 17605562 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 1000000] (imputed) |
CNV | N |
Mapped trait | hair morphology |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005038 |
Study accession | GCST000519 |