SNP Detail For rs17605562
1.Mapping Information
Human SNP ID rs17605562
Human chromosome chr2
Human SNP position 11897053
Pig chromosome chr3
Pig SNP position 133609229
2.Annotation Information
PubMed ID19896111
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19896111
StudyCommon variants in the trichohyalin gene are associated with straight hair in Europeans.
Disease/TraitHair morphology
Initial sample4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals
Replication sampleNA
Region2p25.1
Chromosome idchr2
Chromosome position11897053
Reported geneAC096559.2
Mapped geneLOC105373430 - LOC100506457
Upstream gene id105373430
Downstream gene id100506457
SNP gene ids
Upstream gene distance30776
Downstream gene distance110063
SNP risk allelers17605562-T
SNPsrs17605562
Merged0
SNP id current17605562
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [~ 1000000] (imputed)
CNVN
Mapped traithair morphology
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005038
Study accessionGCST000519