Human SNP ID | rs1759645 |
---|---|
Human chromosome | chr6 |
Human SNP position | 34227089 |
Pig chromosome | chr7 |
Pig SNP position | 34971439 |
PubMed ID | 23563607 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Height |
Initial sample | 8,097 European ancestry tall individuals, 8,099 European ancestry short individuals |
Replication sample | 4,872 European ancestry tall individuals, 4,831 European ancestry short individuals |
Region | 6p21.31 |
Chromosome id | chr6 |
Chromosome position | 34227089 |
Reported gene | HMGA1 |
Mapped gene | KRT18P9 - HMGA1 |
Upstream gene id | 442205 |
Downstream gene id | 3159 |
SNP gene ids | |
Upstream gene distance | 35948 |
Downstream gene distance | 9711 |
SNP risk allele | rs1759645-C |
SNPs | rs1759645 |
Merged | 0 |
SNP id current | 1759645 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.16 |
P value | 0.000000000000005 |
Pvalue mlog | 14.3010299956639 |
P value text | |
Or beta | 1.29 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST001956 |