SNP Detail For rs1759645
1.Mapping Information
Human SNP ID rs1759645
Human chromosome chr6
Human SNP position 34227089
Pig chromosome chr7
Pig SNP position 34971439
2.Annotation Information
PubMed ID23563607
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563607
StudyGenome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
Disease/TraitHeight
Initial sample8,097 European ancestry tall individuals, 8,099 European ancestry short individuals
Replication sample4,872 European ancestry tall individuals, 4,831 European ancestry short individuals
Region6p21.31
Chromosome idchr6
Chromosome position34227089
Reported geneHMGA1
Mapped geneKRT18P9 - HMGA1
Upstream gene id442205
Downstream gene id3159
SNP gene ids
Upstream gene distance35948
Downstream gene distance9711
SNP risk allelers1759645-C
SNPsrs1759645
Merged0
SNP id current1759645
Contextregulatory_region_variant
Intergenic1
Allele frequency0.16
P value0.000000000000005
Pvalue mlog14.3010299956639
P value text
Or beta1.29
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2800000] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001956