SNP Detail For rs17589516
1.Mapping Information
Human SNP ID rs17589516
Human chromosome chr6
Human SNP position 38068644
Pig chromosome chr7
Pig SNP position 38864313
2.Annotation Information
PubMed ID21901158
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21901158
StudyGenome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.
Disease/TraitInsulin resistance/response
Initial sample1,040 African American individuals
Replication sampleNA
Region6p21.2
Chromosome idchr6
Chromosome position38068644
Reported geneZFAND3
Mapped geneZFAND3
Upstream gene id
Downstream gene id
SNP gene ids60685
Upstream gene distance
Downstream gene distance
SNP risk allelers17589516-C
SNPsrs17589516
Merged0
SNP id current17589516
Contextintron_variant
Intergenic0
Allele frequency0.02
P value0.000004
Pvalue mlog5.39794000867203
P value text(HOMA-IR)
Or beta45
%95 Ci[24.00 - 69.00] % increase
PlatformAffymetrix [872243]
CNVN
Mapped traitinsulin resistance
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002614
Study accessionGCST001208