SNP Detail For rs17585887
1.Mapping Information
Human SNP ID rs17585887
Human chromosome chr6
Human SNP position 139514361
Pig chromosome chr1
Pig SNP position 28172527
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitTriglycerides
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region6q24.1
Chromosome idchr6
Chromosome position139514361
Reported geneCITED2
Mapped geneLOC645434 - LOC105378023
Upstream gene id645434
Downstream gene id105378023
SNP gene ids
Upstream gene distance39765
Downstream gene distance11143
SNP risk allelers17585887-T
SNPsrs17585887
Merged
SNP id current17585887
Contextintergenic_variant
Intergenic1
Allele frequency0.44
P value0.00000000007
Pvalue mlog10.1549019599857
P value text
Or beta0.039
%95 Ci[0.027-0.051] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002897